shimming-toolbox
Overview
Welcome to shimming-toolbox!
Features
Installation
Usage
Getting Started
Installing shimming-toolbox
Mac
1. Set Up a Virtual Environment
Bash
Zsh
2. Install dcm2niix
3. Install FSL
4. Install from GitHub
5. Test the Install (optional)
Comprehensive Test
Testing subsets of soft dependencies
Linux
1. Set Up a Virtual Environment
2. Install dcm2niix
3. Install FSL
4. Install from GitHub
5. Test the Install (optional)
Comprehensive Test
Testing subsets of soft dependencies
Installing FSLeyes Plugin
Getting Started
demo_realtime_shimming.sh
Flowchart
Help
Developer Section
Contributing to shimming-toolbox
Introduction
Opening an issue
Before Submitting a New Issue
Submitting an Issue
Issue Examples
Opening a Branch
Developing
Pre-commit checks
Conflicts
Code style
Documentation and docstrings
Testing
Licensing
Committing
Commit Titles
Commit Sequences
Submitting a Pull Request
PR Labels
Work in progress
Continuous Integration
Reviewers
Merging your PR
Versioning
Contributors
CLI Reference
Fieldmapping
st_prepare_fieldmap
Shimming
st_realtime_shim
Masking
st_mask
box
rect
sct
threshold
File Conversion
st_dicom_to_nifti
Image manipulation
st_image
concat
st_maths
mean
Miscellaneous
st_download_data
System Tools
st_check_dependencies
st_dump_env_info
API Reference
Fieldmapping
Masking
Coils
Shim
Optimizer
Image manipulation
Numerical model
Miscellaneous
About
License and Warranty
shimming-toolbox
»
Contributors
Edit on GitHub
Contributors
ΒΆ
List of contributors.
Read the Docs
v: stable
Versions
latest
stable
Downloads
On Read the Docs
Project Home
Builds