Changelog

1.2 (2025-03-31)

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PACKAGE: SHIMMING TOOLBOX

BUG

ENHANCEMENT

  • st_b0shim: Use the table position information to generate spherical harmonic coil profiles with proper origin. View pull request

  • st_b0shim: Allow the use of order 1 or 0 by themselves when using output format of 'gradient'. View pull request

  • st_b0shim: Add the ability to set the current shim coefficient values as inputs in the constraint file. View pull request

  • st_dicom_to_nifti: Add MPRAGE to recognized files. View pull request

FEATURE

PACKAGE: PLUGIN

FEATURE

REPO

TESTING

1.1 (2024-11-08)

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PACKAGE: SHIMMING TOOLBOX

ENHANCEMENT

  • st_b0shim, st_dicom_to_nifti: Update dcm2bids config file for Philips and output JSON sidecar for the calculated field maps. View pull request

BUG

  • st_b0shim: Update signal recovery calculation. View pull request

  • st_dicom_to_nifti: Fix default dcm2bids config file not existing on Windows installation. View pull request

REPO

ENHANCEMENT

BUG

DOCUMENTATION

  • Update documentation configuration file to support ReadTheDocs addons migration. View pull request

1.0 (2024-08-21)

PACKAGE: SHIMMING TOOLBOX

FEATURE

ENHANCEMENT

BUG

  • st_b0shim: Fix bug where there were dead voxels in the calculated shim figures. View pull request

  • st_b0shim: Improve mask resampling. View pull request

  • st_b0shim: Invert polarity of the frequency adjust. View pull request

  • st_b0shim: Fixed a particular case, when there is nothing to shimmed in an optimization. View pull request

  • st_b0shim: Solved a bug where mask_fmap and the dilated mask where switched. View pull request

  • st_b0shim: Fix an issue where real-time shimming would not work using pseudo-inverse. View pull request

  • st_b0shim: Resolve quadrog issue when the sum of the channels constraint was infinite. View pull request

  • st_b0shim: Bug fix: "absolute" output format. View pull request

  • st_b0shim: Update custom coil config file. View pull request

  • st_b0shim: Update how constraints are handled. View pull request

  • st_b0shim: Change erode to dilate for optimization. View pull request

  • st_b0shim: Fix a bug when scanner constraints are not implemented. View pull request

  • st_b0shim, st_mask, st_prepare_fieldmap: Fix st_b0shim realtime-dynamic order 0 and output folder for masking and fieldmap. View pull request

  • st_check_dependencies: Change command that checks for sct installation. View pull request

  • st_check_dependencies: Change SCT CLI call to check version. View pull request

  • st_dicom_to_nifti: Fix phasediff renaming issue for dual-echo fieldmaps. View pull request

  • st_dicom_to_nifti: Update dcm2bids to version 3.0.1. View pull request

  • st_dicom_to_nifti: Improve reliability of phase diff renaming. View pull request

  • st_dicom_to_nifti: Solve dcm2niix not in PATH issue and improve st_prepare_fieldmap documentation. View pull request

  • st_dicom_to_nifti, st_prepare_fieldmap: Bug fix related to updating FSLeyes version and Shimming Toolbox version. View pull request

  • st_download_data: Fix broken link in st_download_data data_create_coil_profiles. View pull request

  • st_prepare_fieldmap: Field mapping pipeline improvement. View pull request

  • st_prepare_fieldmap: Resolve prelude error if --savemask directory is not already created when field mapping. View pull request

  • st_prepare_fieldmap: Change phase range in field mapping calculations. View pull request

  • st_realtime_shim: Fix realtime shimming mask resampling modes. View pull request

  • st_realtime_shim: gradient realtime shim output coordinate system. View pull request

  • st_realtime_shim: Gradient realtime_shim orientation and nan problems. View pull request

  • Solve launchers needing to be launched from the ST venv. View pull request

INSTALLATION

REFACTORING

TESTING

DOCUMENTATION

PACKAGE: PLUGIN

FEATURE

  • st_check_dependencies, st_mask: first iteration to adding BET. View pull request

  • st_create_coil_profiles: Add CLI and GUI command to create constraint files. View pull request

INSTALLATION

ENHANCEMENT

BUG

DOCUMENTATION

TESTING

REFACTORING

REPO

ENHANCEMENT

BUG

DOCUMENTATION

INSTALLATION

TESTING

0.1 (2021-07-28)

PACKAGE: SHIMMING TOOLBOX

BUG

FEATURE

ENHANCEMENT

TESTING

REFACTORING

INSTALLATION

DOCUMENTATION

PACKAGE: PLUGIN

FEATURE

REFACTORING

FEATURE

ENHANCEMENT

REPO

DOCUMENTATION

TESTING

INSTALLATION

BUG