Overview
User Section
Developer Section
correct_2pi_offset()
prepare_fieldmap()
unwrap_phase()
prelude()
shape_cube()
shape_square()
shapes()
threshold()
dilate_binary_mask()
resample_mask()
Coil
Coil.dim
Coil.profile
Coil.affine
Coil.required_constraints
Coil.coef_sum_max
Coil.coef_channel_minmax
Coil.name
Coil.__init__()
Coil.load_constraints()
ScannerCoil
ScannerCoil.__init__()
convert_to_mp()
spherical_harmonics()
siemens_basis()
generate_meshgrid()
get_main_orientation()
phys_gradient()
phys_to_vox_coefs()
resample_from_to()
biot_savart()
realtime_shim()
define_slices()
extend_fmap_to_kernel_size()
extend_slice()
new_bounds_from_currents()
parse_slices()
select_optimizer()
shim_max_intensity()
shim_realtime_pmu_sequencer()
shim_sequencer()
update_affine_for_ap_slices()
b1shim()
combine_maps()
complex_to_vector()
load_siemens_vop()
max_sar()
phase_only_shimming()
vector_to_complex()
Optimizer
Optimizer.coils
Optimizer.unshimmed
Optimizer.unshimmed_affine
Optimizer.merged_coils
Optimizer.merged_bounds
Optimizer.__init__()
Optimizer.merge_bounds()
Optimizer.merge_coils()
Optimizer.optimize()
Optimizer.set_merged_bounds()
Optimizer.set_unshimmed()
LsqOptimizer
LsqOptimizer.__init__()
LsqOptimizer.get_initial_guess()
LsqOptimizer.merge_bounds()
LsqOptimizer.merge_coils()
LsqOptimizer.optimize()
LsqOptimizer.set_merged_bounds()
LsqOptimizer.set_unshimmed()
PmuLsqOptimizer
PmuLsqOptimizer.__init__()
PmuLsqOptimizer.get_initial_guess()
PmuLsqOptimizer.merge_bounds()
PmuLsqOptimizer.merge_coils()
PmuLsqOptimizer.optimize()
PmuLsqOptimizer.set_merged_bounds()
PmuLsqOptimizer.set_unshimmed()
concat_data()
NumericalModel
NumericalModel.gamma
NumericalModel.field_strength
NumericalModel.handedness
NumericalModel.measurement
NumericalModel.proton_density
NumericalModel.T2_star
NumericalModel.generate_deltaB0()
NumericalModel.save()
NumericalModel.simulate_measurement()
dicom_to_nifti()
fix_tfl_b1()
get_acquisition_times()
load_nifti()
read_nii()
download_data()
install_data()
unzip()
PmuResp
PmuResp.fname
PmuResp.data
PmuResp.start_time_mdh
PmuResp.stop_time_mdh
PmuResp.start_time_mpcu
PmuResp.stop_time_mpcu
PmuResp.interp_resp_trace()
PmuResp.read_resp()
add_suffix()
create_fname_from_path()
create_output_dir()
iso_times_to_ms()
montage()
run_subprocess()
set_all_loggers()
splitext()
st_progress_bar()
timeit()
About
We provide the following hands-on tutorials to get familiar with the GUI and the command line tools.