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Overview

  • Welcome to shimming-toolbox!
    • Features
    • Installation
    • Usage

Getting Started

  • Installing shimming-toolbox
    • Mac
      • 1. Set Up a Virtual Environment
        • Bash
        • Zsh
      • 2. Install dcm2niix
      • 3. Install FSL
      • 4. Install from GitHub
      • 5. Test the Install (optional)
        • Comprehensive Test
        • Testing subsets of soft dependencies
    • Linux
      • 1. Set Up a Virtual Environment
      • 2. Install dcm2niix
      • 3. Install FSL
      • 4. Install from GitHub
      • 5. Test the Install (optional)
        • Comprehensive Test
        • Testing subsets of soft dependencies
  • Installing FSLeyes Plugin
  • Getting Started
    • demo_realtime_shimming.sh
  • Flowchart
  • Help

Developer Section

  • Contributing to shimming-toolbox
    • Introduction
    • Opening an issue
      • Before Submitting a New Issue
      • Submitting an Issue
        • Issue Examples
    • Opening a Branch
    • Developing
      • Pre-commit checks
      • Conflicts
      • Code style
      • Documentation and docstrings
      • Testing
      • Licensing
    • Committing
      • Commit Titles
      • Commit Sequences
    • Submitting a Pull Request
      • PR Labels
      • Work in progress
      • Continuous Integration
      • Reviewers
      • Merging your PR
    • Versioning
  • Contributors
  • CLI Reference
    • Fieldmapping
      • st_prepare_fieldmap
    • Shimming
      • st_realtime_shim
    • Masking
      • st_mask
        • box
        • rect
        • sct
        • threshold
    • File Conversion
      • st_dicom_to_nifti
    • Image manipulation
      • st_image
        • concat
      • st_maths
        • mean
    • Miscellaneous
      • st_download_data
    • System Tools
      • st_check_dependencies
      • st_dump_env_info
  • API Reference
    • Fieldmapping
    • Masking
    • Coils
    • Shim
    • Optimizer
    • Image manipulation
    • Numerical model
    • Miscellaneous

About

  • License and Warranty
shimming-toolbox
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  • Contributors
  • Edit on GitHub

ContributorsΒΆ

List of contributors.

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© Copyright 2020, NeuroPoly Lab, Polytechnique Montreal. Revision 694ef75e.

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