shimming-toolbox
Overview
Welcome to shimming-toolbox!
Features
Installation
Usage
User Section
Installation
Dependencies
Installation
Test the Installation
Comprehensive Test
Testing subsets of soft dependencies
For Developers
Tutorials
Dynamic Shimming
Download test data
Launch the plugin
Create a Fieldmap
Create a Mask
Dynamic shimming
Static B1+ shimming
Download test data
Convert DICOM to NIfTI
Create a Mask
Static B1+ shimming
Shell scripts
demo_realtime_shimming.sh
B1+ shimming
Command Line Tools
Fieldmapping
st_prepare_fieldmap
Shimming
st_b0shim
dynamic-cli
realtime-cli
realtime-shim-cli
st_b1shim
Masking
st_mask
box
rect
sct
threshold
File Conversion
st_dicom_to_nifti
Image manipulation
st_image
concat
logical-and
st_maths
mean
Miscellaneous
st_download_data
System Tools
st_check_dependencies
st_dump_env_info
Help
Developer Section
Contributing to shimming-toolbox
Introduction
Opening an issue
Before Submitting a New Issue
Submitting an Issue
Issue Examples
Opening a Branch
Developing
Pre-commit checks
Conflicts
Code style
Documentation and docstrings
Testing
Licensing
Committing
Commit Titles
Commit Sequences
Submitting a Pull Request
PR Labels
Work in progress
Continuous Integration
Reviewers
Merging your PR
Versioning
Contributors
API Reference
Fieldmapping
Masking
Coils
Shim
Optimizer
Image manipulation
Numerical model
Miscellaneous
About
License and Warranty
shimming-toolbox
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Contributors
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Contributors
List of contributors.
Read the Docs
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Versions
latest
stable
Downloads
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